One of the links was broken, but I'm not sure what conclusion you drew from them. The one graph (last link) shows that the government still funds about 25% of the research - are you suggesting this is a small amount?
You quote MIT's royalty revenue of $69m - there federal grant funding is likely ~10x higher than that if I had to estimate.
I'll leave your statement that clinical development has nothing to do with science for someone else to comment on...
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