chipguy,
Presumably a one link Opteron has its one link on a specific set of pins. If it is kaput then having a working link on another set of pins, or perhaps not bonded out at all, isn't going to help.
Why?
Programable chips - reconfiguring the internal wiring by writing data to a programable port - is used in many applications. There are numerous ways to do this! It seems that to be able to design an internal HT to a logical block of pins, and then assign that logical block to physical pins by initializing from a port, should not be a hard spec.