Thank you for posting the whole rule but, I've read that dozens of times over the years. It says it right in there.
Lets start with the first line of Rule 5505:
So we need ALL of the requirements, and at least one of the standards (there are three).
We can qualify for Equity StandardANDMarket Value of Listed Securities Standard
Equity standard is self explanatory. Your hang-up is with standard 2 where it says:
See where it says "only"? Well Kraig Labs won't qualify for only that standard, they will qualify them for standard 1 as well. Thus negating the 90 days. It says it right there. The very first line of the rule tells you you can qualify for more than one standard.